Quickstart

Running XPRESSpipe

Along with the video walkthroughs provided below, we recommend users start with the build module after installation:

$ xpresspipe build

This will present the user with a series of questions to help design the command that should be executed in the command line to curate a reference or to run the pipeline

Video Walkthroughs

The following is a short tutorial showing you how to install XPRESSpipe:

Note

The pip install . method has been replaced with a script that is executed by running bash install.sh.

Reference building

Running XPRESSpipe on sequence data

If any of these are going too slow for you, check them out in the README