Quickstart¶
Running XPRESSpipe¶
Along with the video walkthroughs provided below, we recommend users start with the
build
module after installation:$ xpresspipe build
This will present the user with a series of questions to help design the command that should be executed in the command line
to curate a reference or to run the pipeline
Video Walkthroughs¶
The following is a short tutorial showing you how to install XPRESSpipe:
Note
The pip install .
method has been replaced with a script that is executed by running bash install.sh
.
Reference building
Running XPRESSpipe on sequence data
If any of these are going too slow for you, check them out in the README